Data annotation

• A.S. Bates, J.S. Phelps, M. Kim, H.H. Yang, A. Matsliah, Z. Ajabi, E. Perlman, K.M. Delgado, M.A. Monium Osman, C.K. Salmon, J. Gager, B. Silverman, S. Renauld, M.F. Collie, J. Fan, D.A. Pacheco, Y. Zhao, J. Patel, W. Zhang, L. Serratosa Capdevilla, R.J.V. Roberts, E.J. Munnelly, N. Griggs, H. Langley, B. Moya Llamas, R.T. Maloney, S. Yu, A.R. Sterling, M. Sorek, K. Kruk, N. Serafetinidis, S. Dhawan, T. Stürner, F. Klemm, P. Brooks, E. Lesser, J.M. Jones, S.E. Pierce-Lundgren, S. Lee, Y. Luo, A.P. Cook, T.H. McKim, E.C. Kophs, T. Falt, A.M. Negrón Morales, A. Burke, J. Hebditch, K.P. Willie, R. Willie, S. Popovych, N. Kemnitz, D. Ih, K. Lee, R. Lu, A. Halageri, J. A. Bae, B. Jourdan, G. Schwartzman, D.D. Demarest, E. Behnke, D. Bland, A. Kristiansen, J. Skelton, T. Stocks, D. Garner, F. Salman, K.C. Daly, A. Hernandez, S. Kumar; BANC-FlyWire Consortium; S. Dorkenwald, F. Collman, M.P. Suver, L.M. Fenk, M.J. Pankratz, G.S.X.E. Jefferis, K. Eichler, A.M. Seeds, S. Hampel, S. Agrawal, M. Zandawala, T. Macrina, D. Adjavon, J. Funke, J.C. Tuthill, A. Azevedo, H. S. Seung, B. L. de Bivort, M. Murthy, J. Drugowitsch, R.I. Wilson, W. A. Lee (2025) Distributed control circuits across a brain-and-cord connectome. bioRxiv. doi: https://doi.org/10.1101/2025.07.31.667571

• S. Cachero, M. Mitletton, I.R. Beckett, E.C. Marin, L. Serratosa Capdevila, M. Gkantia, H. Lacin, G.S.X.E. Jefferis, E. Donà (2025) A Developmental Atlas of the Drosophila Nerve Cord Uncovers a Global Temporal Code for Neuronal Identity. bioRxiv. doi: https://doi.org/10.1101/2025.07.16.664682

• T Stuerner*, P Brooks*, L Serratosa Capdevila, BJ Morris, A Javier, S Fang, M Gkantia, S Cachero, IR Beckett, P Schlegel, AS Champion, I Moitra, A Richards, F Klemm, L Kugel, S Namiki, HSJ Cheong, J Kovalyak, E Tenshaw, R Parekh, JS Phelps, B Mark, S Dorkenwald, AS Bates, A Matsliah, S Yu, CE McKellar, A Sterling, S Seung, M Murthy, J Tuthill, WA Lee, GM Card, M Costa, GSXE Jefferis, K Eichler (2025) Comparative connectomics of Drosophila descending and ascending neurons. Nature.  643, 158–172.

• A Rayshubskiy, SL Holtz, A Bates, QX Vanderbeck, L Serratosa Capdevila, RI Wilson (2024) Neural circuit mechanisms for steering control in walking Drosophila. Elife, 13:RP102230.

• P Schlegel, Y Yin, AS Bates, S Dorkenwald, K Eichler, P Brooks, DS Han, M Gkantia, M dos Santos, EJ Munnelly, G Badalamente, L Serratosa Capdevila, VA Sane, MW Pleijzier, IFM Tamimi, CR Dunne, I Salgarella, A Javier, S Fang, E Perlman, T Kazimiers, SR Jagannathan, A Matsliah, AR Sterling, S Yu, CE McKellar, FlyWire Consortium, M Costa, HS Seung, M Murthy, V Hartenstein, DD Bock, GSXE Jefferis (2024) Whole-brain annotation and multi-connectome cell typing quantifies circuit stereotypy in Drosophila. Nature, 634, 139–152.

• S Dorkenwald, A Matsliah, AR Sterling, P Schlegel, S Yu, CE McKellar, A Lin, M Costa, K Eichler, Y Yin, W Silversmith, C Schneider-Mizell, CS Jordan, D Brittain, A Halageri, K Kuehner, O Ogedengbe, R Morey, J Gager, K Kruk, E Perlman, R Yang, D Deutsch, D Bland, M Sorek, R Lu, T Macrina, K Lee, JA Bae, S Mu, B Nehoran, E Mitchell, S Popovych, J Wu, Z Jia, M Castro, N Kemnitz, D Ih, A Shakeel Bates, N Eckstein, J Funke, F Collman, DD Bock, GSXE Jefferis, HS Seung, M Murthy, the FlyWire Consortium (2024) Neuronal wiring diagram of an adult brain. Nature, 634, 124–138.

• MA Labouesse, M Wilhelm, Z Kagiampaki, AG Yee, R Denis, M Harada, A Gresch, A-M Marinescu, K Otomo, S Curreli, L Serratosa Capdevila, X Zhou, RB Cola, L Ravotto, C Glück, S Cherepanov, B Weber, X Zhou, J Katner, KA Svensson, T Fellin, L-E Trudeau, CP Ford, Y Sych, T Patriarchi (2024) A chemogenetic approach for dopamine imaging with tunable sensitivity. Nature Communications, 15, 5551.

• HH Yang, LE Brezovec, L Serratosa Capdevila, QX Vanderbeck, A Adachi, RS Mann, RI Wilson (2024) Fine-grained descending control of steering in walking Drosophila. Cell, 187, 1–19.

• M Harada, L Serratosa Capdevila, M Wilhelm, D Burdakov, T Patriarchi (2023) Stimulation of VTA dopamine inputs to LH upregulates orexin neuronal activity in a DRD2-dependent manner. Elife, 12:RP90158.

• M Wilhelm, Y Sych, A Fomins, JL Alatorre Warren, C Lewis, L Serratosa Capdevila, R Boehringer, EA Amadei, B Grewe, EC O’Connor, BJ Hall, F Helmchen (2023) Striatum-projecting prefrontal cortex neurons support working memory maintenance. Nature Communications, 14, 7016.

• P Schlegel*, AS Bates*, T Stürner, SR Jagannathan, N Drummond, J Hsu, L Serratosa Capdevila, A Javier, EC Marin, A Barth-Maron, IFM Tamimi, F Li, GM Rubin, SM Plaza, M Costa, GSXE Jefferis (2021). Information flow, cell types and stereotypy in a full olfactory connectome. eLife, 10:e66018.

• AS Bates*, P Schlegel*, RJV Roberts, N Drummond, I Tamimi, R Turnbull,  X Zhao, EC Marin, PD Popovici, S Dhawan, A Jamasb, A Javier, L Serratosa Capdevila, F Li, GM Rubin, S Waddell, DD Bock, M Costa, GSXE Jefferis (2020). Complete connectomic reconstruction of olfactory projection neurons in the fly brain. Current Biology, S0960-9822(20)30858-7.

Editing

• T Stuerner*, P Brooks*, L Serratosa Capdevila, BJ Morris, A Javier, S Fang, M Gkantia, S Cachero, IR Beckett, P Schlegel, AS Champion, I Moitra, A Richards, F Klemm, L Kugel, S Namiki, HSJ Cheong, J Kovalyak, E Tenshaw, R Parekh, JS Phelps, B Mark, S Dorkenwald, AS Bates, A Matsliah, S Yu, CE McKellar, A Sterling, S Seung, M Murthy, J Tuthill, WA Lee, GM Card, M Costa, GSXE Jefferis, K Eichler (2025) Comparative connectomics of Drosophila descending and ascending neurons. Nature.

• P Schlegel, Y Yin, AS Bates, S Dorkenwald, K Eichler, P Brooks, DS Han, M Gkantia, M dos Santos, EJ Munnelly, G Badalamente, L Serratosa Capdevila, VA Sane, MW Pleijzier, IFM Tamimi, CR Dunne, I Salgarella, A Javier, S Fang, E Perlman, T Kazimiers, SR Jagannathan, A Matsliah, AR Sterling, S Yu, CE McKellar, FlyWire Consortium, M Costa, HS Seung, M Murthy, V Hartenstein, DD Bock, GSXE Jefferis (2024) Whole-brain annotation and multi-connectome cell typing quantifies circuit stereotypy in Drosophila. Nature, 634, 139–152.

• N Eckstein*, AS Bates*, A Champion, M Du, Y Yin, P Schlegel, A Kun-Yang Lu, T Rymer, S Finley-May, T Paterson, R Parekh, S Dorkenwald, A Matsliah,7 S Yu, C McKellar, A Sterling, K Eichler, M Costa, S Seung, M Murthy, V Hartenstein, GSXE Jefferis, J Funke (2024) Neurotransmitter Classification from Electron Microscopy Images at Synaptic Sites in Drosophila Melanogaster. Cell, Vol. 34 (10), 2574-2594.

• M Harada, L Serratosa Capdevila, M Wilhelm, D Burdakov, T Patriarchi (2023) Stimulation of VTA dopamine inputs to LH upregulates orexin neuronal activity in a DRD2-dependent manner. Elife, 12:RP90158.

• M Wilhelm, Y Sych, A Fomins, JL Alatorre Warren, C Lewis, L Serratosa Capdevila, R Boehringer, EA Amadei, B Grewe, EC O’Connor, BJ Hall, F Helmchen (2023) Striatum-projecting prefrontal cortex neurons support working memory maintenance. Nature Communications, 14, 7016.

• KR Mannion, EF Ballare, M Marks, T Gruber (2022) A multicomponent approach to studying cultural propensities during foraging in the wild. The Journal of Animal Ecology. DOI: 10.1111/1365-2656.13820. PMID: 36180982.

• A Lazari, P Salvan, L Verhagen, M Cottaar, D Papp, OJ van der Werf, B Gavine, J Kolasinski, M Webster, CJ Stagg, MFS Rushworth, H Johansen-Berg (2022) A macroscopic link between interhemispheric tract myelination and cortico-cortical interactions during action reprogramming. Nature Communications, 13, 4253.

• A Lazari, P Salvan, M Cottaar, D Papp, MFS Rushworth, H Johansen-Berg (2022) Hebbian activity-dependent plasticity in white matter. Cell Reports, Vol. 34 (11), 110951.

• P Janz, MJ Nicolas, RL Redondo, M Valencia (2022) GABABR activation partially normalizes acute NMDAR hypofunction oscillatory abnormalities but fails to rescue sensory processing deficits. Journal of Neurochemistry, Vol. 1(5), 417-434.

• E Parra-Barrero, K Diba, S Cheng (2021) Neuronal sequences during theta rely on behavior-dependent spatial maps. eLife, 10:e70296.

• M Bainier, A Su, R L Redondo (2021) 3D printed rodent skin-skull-brain model: A novel animal-free approach for neurosurgical training. PLOS ONE, 16(6): e0253477.

• EC Marin, L Büld, M Theiss, T Sarkissian, RJV Roberts, R Turnbull, IMF Tamimi,  MW Pleijzier,  WJ Laursen, N Drummond, P Schlegel, AS Bates, F Li, M Landgraf, M Costa, DD Bock, PA Garrity, GSXE Jefferis (2020). Connectomics analysis reveals first, second, and third order thermosensory and hygrosensory neurons in the adult Drosophila brain. Current Biology, S0960-9822(20)30844-7.